feat: Add HR data visualization and CSV conversion scripts

.gitignore

@@ -1 +1,179 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# UV
+#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#uv.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+# Ruff stuff:
+.ruff_cache/
+
+# PyPI configuration file
+.pypirc
+
+# user
+.DS_Store
 *.parquet
+*.png

.vscode/settings.json

@@ -1,4 +1,7 @@
 {
     "python.analysis.autoImportCompletions": true,
-    "python.analysis.typeCheckingMode": "standard"
+    "python.analysis.typeCheckingMode": "standard",
+    "cSpell.words": [
+        "timescape"
+    ]
 }

2025-06-10_16_26.CSV

@@ -0,0 +1,135 @@
+time,hr
+00:00:00,113
+00:00:00,111
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app/model/__init__.py

@@ -0,0 +1,213 @@
+from dataclasses import dataclass
+from enum import IntEnum
+import struct
+from typing import ClassVar, Tuple, Final, LiteralString
+from pydantic import BaseModel, Field, computed_field
+
+
+class AlgoOpMode(IntEnum):
+    """Equivalent to max::ALGO_OP_MODE"""
+
+    CONTINUOUS_HRM_CONTINUOUS_SPO2 = 0x00  # Continuous HRM, continuous SpO2
+    CONTINUOUS_HRM_ONE_SHOT_SPO2 = 0x01  # Continuous HRM, one-shot SpO2
+    CONTINUOUS_HRM = 0x02  # Continuous HRM
+    SAMPLED_HRM = 0x03  # Sampled HRM
+    SAMPLED_HRM_ONE_SHOT_SPO2 = 0x04  # Sampled HRM, one-shot SpO2
+    ACTIVITY_TRACKING_ONLY = 0x05  # Activity tracking only
+    SPO2_CALIBRATION = 0x06  # SpO2 calibration
+
+
+class ActivateClass(IntEnum):
+    """Equivalent to max::ACTIVATE_CLASS"""
+
+    REST = 0
+    WALK = 1
+    RUN = 2
+    BIKE = 3
+
+
+class SPO2State(IntEnum):
+    """Equivalent to max::SPO2_STATE"""
+
+    LED_ADJUSTMENT = 0
+    COMPUTATION = 1
+    SUCCESS = 2
+    TIMEOUT = 3
+
+
+class SCDState(IntEnum):
+    """Equivalent to max::SCD_STATE"""
+
+    UNDETECTED = 0
+    OFF_SKIN = 1
+    ON_SOME_SUBJECT = 2
+    ON_SKIN = 3
+
+
+class AlgoModelData(BaseModel):
+    op_mode: AlgoOpMode
+    hr: int  # uint16, 10x calculated heart rate
+    hr_conf: int  # uint8, confidence level in %
+    rr: int  # uint16, 10x RR interval in ms
+    rr_conf: int  # uint8
+    activity_class: ActivateClass
+    r: int  # uint16, 1000x SpO2 R value
+    spo2_conf: int  # uint8
+    spo2: int  # uint16, 10x SpO2 %
+    spo2_percent_complete: int  # uint8
+    spo2_low_signal_quality_flag: int  # uint8
+    spo2_motion_flag: int  # uint8
+    spo2_low_pi_flag: int  # uint8
+    spo2_unreliable_r_flag: int  # uint8
+    spo2_state: SPO2State
+    scd_contact_state: SCDState
+    # don't include reserved into the struct
+    # uint32
+
+    _FORMAT: ClassVar[LiteralString] = "<BHBHBBHBHBBBBBBBI"
+
+    @computed_field
+    @property
+    def hr_f(self) -> float:
+        """Heart rate in beats per minute"""
+        return self.hr / 10.0
+
+    @computed_field
+    @property
+    def spo2_f(self) -> float:
+        """SpO2 percentage"""
+        return self.spo2 / 10.0
+
+    @computed_field
+    @property
+    def r_f(self) -> float:
+        """SpO2 R value"""
+        return self.r / 1000.0
+
+    @computed_field
+    @property
+    def rr_f(self) -> float:
+        """RR interval in milliseconds"""
+        return self.rr / 10.0
+
+    @classmethod
+    def unmarshal(cls, data: bytes) -> "AlgoModelData":
+        values = struct.unpack(cls._FORMAT, data)
+        return cls(
+            op_mode=values[0],
+            hr=values[1],
+            hr_conf=values[2],
+            rr=values[3],
+            rr_conf=values[4],
+            activity_class=values[5],
+            r=values[6],
+            spo2_conf=values[7],
+            spo2=values[8],
+            spo2_percent_complete=values[9],
+            spo2_low_signal_quality_flag=values[10],
+            spo2_motion_flag=values[11],
+            spo2_low_pi_flag=values[12],
+            spo2_unreliable_r_flag=values[13],
+            spo2_state=values[14],
+            scd_contact_state=values[15],
+        )
+
+
+class AlgoReport(BaseModel):
+    led_1: int  # uint32
+    led_2: int  # uint32
+    led_3: int  # uint32
+    accel_x: int  # int16, in uint of g
+    accel_y: int  # int16, in uint of g
+    accel_z: int  # int16, in uint of g
+    data: AlgoModelData
+
+    @classmethod
+    def unmarshal(cls, buf: bytes) -> "AlgoReport":
+        FORMAT: Final[str] = "<IIIhhh"
+        led_1, led_2, led_3, accel_x, accel_y, accel_z = struct.unpack(
+            FORMAT, buf[: struct.calcsize(FORMAT)]
+        )
+        data = AlgoModelData.unmarshal(buf[struct.calcsize(FORMAT) :])
+        return cls(
+            led_1=led_1,
+            led_2=led_2,
+            led_3=led_3,
+            accel_x=accel_x,
+            accel_y=accel_y,
+            accel_z=accel_z,
+            data=data,
+        )
+
+
+class HrConfidence(IntEnum):
+    """Equivalent to max::HR_CONFIDENCE"""
+
+    ZERO = 0
+    LOW = 1
+    MEDIUM = 2
+    HIGH = 3
+
+
+def hr_confidence_to_num(hr_confidence: HrConfidence) -> float:
+    if hr_confidence == HrConfidence.ZERO:
+        return 0
+    elif hr_confidence == HrConfidence.LOW:
+        return 25
+    elif hr_confidence == HrConfidence.MEDIUM:
+        return 62.5
+    elif hr_confidence == HrConfidence.HIGH:
+        return 100
+    else:
+        raise ValueError(f"Invalid HR confidence: {hr_confidence}")
+
+
+@dataclass
+class HrStatusFlags:
+    # 2 bits
+    hr_confidence: HrConfidence
+    # 1 bit
+    is_active: bool
+    # 1 bit
+    is_on_skin: bool
+    # 4 bits
+    battery_level: int
+
+    @staticmethod
+    def unmarshal(data: bytes) -> "HrStatusFlags":
+        val = data[0]
+        return HrStatusFlags(
+            hr_confidence=HrConfidence(val & 0b11),
+            is_active=(val & 0b100) != 0,
+            is_on_skin=(val & 0b1000) != 0,
+            battery_level=val >> 4,
+        )
+
+
+@dataclass
+class HrPacket:
+    # 8 bits
+    status: HrStatusFlags
+    # 8 bits
+    id: int
+    # 8 bits
+    hr: int
+    # 8 bits (as `n`) + n x 24 bits
+    raw_data: list[int]
+
+    @staticmethod
+    def unmarshal(data: bytes) -> "HrPacket":
+        status = HrStatusFlags.unmarshal(data[0:1])
+        id = data[1]
+        hr = data[2]
+        raw_data_count = data[3]
+        raw_data_payload = data[4:]
+        if len(raw_data_payload) != (expected_raw_data_len := raw_data_count * 3):
+            raise ValueError(
+                f"Invalid raw data payload length: {len(raw_data_payload)}, expected {expected_raw_data_len}"
+            )
+        raw_data = [
+            int.from_bytes(raw_data_payload[i : i + 3], "little")
+            for i in range(0, expected_raw_data_len, 3)
+        ]
+        return HrPacket(status, id, hr, raw_data)

app/proto/__init__.py

@@ -0,0 +1,221 @@
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# sources: nanopb.proto
+# plugin: python-betterproto
+# This file has been @generated
+
+from dataclasses import dataclass
+from typing import List
+
+import betterproto
+import betterproto.lib.google.protobuf as betterproto_lib_google_protobuf
+
+
+class FieldType(betterproto.Enum):
+    FT_DEFAULT = 0
+    FT_CALLBACK = 1
+    FT_POINTER = 4
+    FT_STATIC = 2
+    FT_IGNORE = 3
+    FT_INLINE = 5
+
+
+class IntSize(betterproto.Enum):
+    IS_DEFAULT = 0
+    IS_8 = 8
+    IS_16 = 16
+    IS_32 = 32
+    IS_64 = 64
+
+
+class TypenameMangling(betterproto.Enum):
+    M_NONE = 0
+    M_STRIP_PACKAGE = 1
+    M_FLATTEN = 2
+    M_PACKAGE_INITIALS = 3
+
+
+class DescriptorSize(betterproto.Enum):
+    DS_AUTO = 0
+    DS_1 = 1
+    DS_2 = 2
+    DS_4 = 4
+    DS_8 = 8
+
+
+@dataclass(eq=False, repr=False)
+class NanoPbOptions(betterproto.Message):
+    """
+    This is the inner options message, which basically defines options for
+     a field. When it is used in message or file scope, it applies to all
+     fields.
+    """
+
+    max_size: int = betterproto.int32_field(1)
+    """
+    Allocated size for 'bytes' and 'string' fields.
+     For string fields, this should include the space for null terminator.
+    """
+
+    max_length: int = betterproto.int32_field(14)
+    """
+    Maximum length for 'string' fields. Setting this is equivalent
+     to setting max_size to a value of length+1.
+    """
+
+    max_count: int = betterproto.int32_field(2)
+    """Allocated number of entries in arrays ('repeated' fields)"""
+
+    int_size: "IntSize" = betterproto.enum_field(7)
+    """
+    Size of integer fields. Can save some memory if you don't need
+     full 32 bits for the value.
+    """
+
+    enum_intsize: "IntSize" = betterproto.enum_field(34)
+    """Size for enum fields. Supported by C++11 and C23 standards."""
+
+    type: "FieldType" = betterproto.enum_field(3)
+    """Force type of field (callback or static allocation)"""
+
+    long_names: bool = betterproto.bool_field(4)
+    """Use long names for enums, i.e. EnumName_EnumValue."""
+
+    packed_struct: bool = betterproto.bool_field(5)
+    """
+    Add 'packed' attribute to generated structs.
+     Note: this cannot be used on CPUs that break on unaligned
+     accesses to variables.
+    """
+
+    packed_enum: bool = betterproto.bool_field(10)
+    """Add 'packed' attribute to generated enums."""
+
+    skip_message: bool = betterproto.bool_field(6)
+    """Skip this message"""
+
+    no_unions: bool = betterproto.bool_field(8)
+    """Generate oneof fields as normal optional fields instead of union."""
+
+    msgid: int = betterproto.uint32_field(9)
+    """integer type tag for a message"""
+
+    anonymous_oneof: bool = betterproto.bool_field(11)
+    """decode oneof as anonymous union"""
+
+    proto3: bool = betterproto.bool_field(12)
+    """Proto3 singular field does not generate a "has_" flag"""
+
+    proto3_singular_msgs: bool = betterproto.bool_field(21)
+    """
+    Force proto3 messages to have no "has_" flag.
+     This was default behavior until nanopb-0.4.0.
+    """
+
+    enum_to_string: bool = betterproto.bool_field(13)
+    """
+    Generate an enum->string mapping function (can take up lots of space).
+    """
+
+    enum_validate: bool = betterproto.bool_field(32)
+    """Generate validation methods for enums"""
+
+    fixed_length: bool = betterproto.bool_field(15)
+    """Generate bytes arrays with fixed length"""
+
+    fixed_count: bool = betterproto.bool_field(16)
+    """Generate repeated field with fixed count"""
+
+    submsg_callback: bool = betterproto.bool_field(22)
+    """
+    Generate message-level callback that is called before decoding submessages.
+     This can be used to set callback fields for submsgs inside oneofs.
+    """
+
+    mangle_names: "TypenameMangling" = betterproto.enum_field(17)
+    """
+    Shorten or remove package names from type names.
+     This option applies only on the file level.
+    """
+
+    callback_datatype: str = betterproto.string_field(18)
+    """Data type for storage associated with callback fields."""
+
+    callback_function: str = betterproto.string_field(19)
+    """
+    Callback function used for encoding and decoding.
+     Prior to nanopb-0.4.0, the callback was specified in per-field pb_callback_t
+     structure. This is still supported, but does not work inside e.g. oneof or pointer
+     fields. Instead, a new method allows specifying a per-message callback that
+     will be called for all callback fields in a message type.
+    """
+
+    descriptorsize: "DescriptorSize" = betterproto.enum_field(20)
+    """
+    Select the size of field descriptors. This option has to be defined
+     for the whole message, not per-field. Usually automatic selection is
+     ok, but if it results in compilation errors you can increase the field
+     size here.
+    """
+
+    default_has: bool = betterproto.bool_field(23)
+    """Set default value for has_ fields."""
+
+    include: List[str] = betterproto.string_field(24)
+    """Extra files to include in generated `.pb.h`"""
+
+    exclude: List[str] = betterproto.string_field(26)
+    """
+    Automatic includes to exclude from generated `.pb.h`
+     Same as nanopb_generator.py command line flag -x.
+    """
+
+    package: str = betterproto.string_field(25)
+    """Package name that applies only for nanopb."""
+
+    type_override: "betterproto_lib_google_protobuf.FieldDescriptorProtoType" = (
+        betterproto.enum_field(27)
+    )
+    """
+    Override type of the field in generated C code. Only to be used with related field types
+    """
+
+    label_override: "betterproto_lib_google_protobuf.FieldDescriptorProtoLabel" = (
+        betterproto.enum_field(31)
+    )
+    """
+    Override of the label of the field (see FieldDescriptorProto.Label). Can be used to create
+     fields which nanopb considers required in proto3, or whether nanopb treats the field as
+     optional/required/repeated.
+    """
+
+    sort_by_tag: bool = betterproto.bool_field(28)
+    """
+    Due to historical reasons, nanopb orders fields in structs by their tag number
+     instead of the order in .proto. Set this to false to keep the .proto order.
+     The default value will probably change to false in nanopb-0.5.0.
+    """
+
+    fallback_type: "FieldType" = betterproto.enum_field(29)
+    """
+    Set the FT_DEFAULT field conversion strategy.
+     A field that can become a static member of a c struct (e.g. int, bool, etc)
+     will be a a static field.
+     Fields with dynamic length are converted to either a pointer or a callback.
+    """
+
+    initializer: str = betterproto.string_field(30)
+    """
+    Override initializer used in generated MyMessage_init_zero and MyMessage_init_default macros
+     By default decided automatically based on field default value and datatype.
+    """
+
+    discard_unused_automatic_types: bool = betterproto.bool_field(33)
+    """
+    Discard unused types that are automatically generated by protoc if they are not actually
+     needed. Currently this applies to map< > types when the field is ignored by options.
+    """
+
+    discard_deprecated: bool = betterproto.bool_field(35)
+    """
+    Discard messages and fields marked with [deprecated = true] in the proto file.
+    """

app/proto/hr_packet/__init__.py

@@ -0,0 +1,96 @@
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# sources: hr_packet.proto
+# plugin: python-betterproto
+# This file has been @generated
+
+from dataclasses import dataclass
+from typing import List
+
+import betterproto
+
+
+class HrConfidence(betterproto.Enum):
+    ZERO = 0
+    """[0,25)"""
+
+    LOW = 1
+    """[25,50)"""
+
+    MEDIUM = 2
+    """[50,75]"""
+
+    HIGH = 3
+    """(75,100]"""
+
+
+class LoRaBw(betterproto.Enum):
+    BW_NONE = 0
+    BW_10_4 = 8
+    """
+    nobody is using 7.8 kHz bandwidth
+     so to satisfy protobuf, we use NONE for zero value
+    """
+
+    BW_15_6 = 1
+    BW_20_8 = 9
+    BW_31_25 = 2
+    BW_41_7 = 10
+    BW_62_5 = 3
+    BW_125_0 = 4
+    BW_250_0 = 5
+    BW_500_0 = 6
+
+
+@dataclass(eq=False, repr=False)
+class LoRaParameters(betterproto.Message):
+    bw: "LoRaBw" = betterproto.enum_field(1)
+    sf: int = betterproto.int32_field(2)
+    frequency: float = betterproto.float_field(3)
+
+
+@dataclass(eq=False, repr=False)
+class StatusFlag(betterproto.Message):
+    hr_confidence: "HrConfidence" = betterproto.enum_field(1)
+    is_active: bool = betterproto.bool_field(2)
+    is_on_skin: bool = betterproto.bool_field(3)
+    battery: int = betterproto.uint32_field(4)
+
+
+@dataclass(eq=False, repr=False)
+class HrOnlyPacket(betterproto.Message):
+    status: "StatusFlag" = betterproto.message_field(1)
+    id: int = betterproto.uint32_field(2)
+    packet_num: int = betterproto.uint32_field(3)
+    hr: int = betterproto.uint32_field(4)
+
+
+@dataclass(eq=False, repr=False)
+class HrPpgPacket(betterproto.Message):
+    status: "StatusFlag" = betterproto.message_field(1)
+    id: int = betterproto.uint32_field(2)
+    packet_num: int = betterproto.uint32_field(3)
+    hr: int = betterproto.uint32_field(4)
+    ppg_data: List[int] = betterproto.uint32_field(5)
+
+
+@dataclass(eq=False, repr=False)
+class PacketStatus(betterproto.Message):
+    signal_rssi_pkt: int = betterproto.sint32_field(1)
+    """
+    Estimation of RSSI of the LoRa® signal (after despreading) on last packet received.
+    """
+
+
+@dataclass(eq=False, repr=False)
+class GatewayInfo(betterproto.Message):
+    region_id: int = betterproto.uint32_field(1)
+    gateway_mac: bytes = betterproto.bytes_field(2)
+    radio_parameters: "LoRaParameters" = betterproto.message_field(3)
+
+
+@dataclass(eq=False, repr=False)
+class HrPacket(betterproto.Message):
+    gateway_info: "GatewayInfo" = betterproto.message_field(1)
+    hr_only_packet: "HrOnlyPacket" = betterproto.message_field(2, group="packet")
+    hr_ppg_packet: "HrPpgPacket" = betterproto.message_field(3, group="packet")
+    packet_status: "PacketStatus" = betterproto.message_field(4)

app/utils/__init__.py

@@ -0,0 +1,70 @@
+import time
+from datetime import timedelta
+
+
+class Instant:
+    """A measurement of a monotonically nondecreasing clock."""
+
+    _time: float
+
+    @staticmethod
+    def clock() -> float:
+        """Get current clock time in microseconds."""
+        return time.monotonic()
+
+    def __init__(self):
+        """Initialize with current clock time."""
+        self._time = self.clock()
+
+    @classmethod
+    def now(cls) -> "Instant":
+        """Create new Instant with current time."""
+        return cls()
+
+    def elapsed(self) -> timedelta:
+        """Get elapsed time as timedelta."""
+        now = self.clock()
+        diff = now - self._time
+        return timedelta(seconds=diff)
+
+    def elapsed_ms(self) -> int:
+        """Get elapsed time in milliseconds."""
+        return int(self.elapsed().total_seconds() * 1000)
+
+    def has_elapsed_ms(self, ms: int) -> bool:
+        """Check if specified milliseconds have elapsed."""
+        return self.elapsed_ms() >= ms
+
+    def mut_every_ms(self, ms: int) -> bool:
+        """Check if time has elapsed and reset if true."""
+        if self.elapsed_ms() >= ms:
+            self.mut_reset()
+            return True
+        return False
+
+    def has_elapsed(self, duration: timedelta) -> bool:
+        """Check if specified duration has elapsed."""
+        return self.elapsed() >= duration
+
+    def mut_every(self, duration: timedelta) -> bool:
+        """Check if duration has elapsed and reset if true."""
+        if self.has_elapsed(duration):
+            self.mut_reset()
+            return True
+        return False
+
+    def mut_reset(self) -> None:
+        """Reset the timer to current time."""
+        self._time = self.clock()
+
+    def mut_elapsed_and_reset(self) -> timedelta:
+        """Get elapsed time and reset timer."""
+        now = self.clock()
+        diff = now - self._time
+        duration = timedelta(microseconds=diff)
+        self._time = now
+        return duration
+
+    def count(self) -> float:
+        """Get the internal time counter value."""
+        return self._time

ble_forward.py

@@ -0,0 +1,63 @@
+import anyio
+from bleak import BleakScanner, BleakClient
+from bleak.backends.characteristic import BleakGATTCharacteristic
+from bleak.backends.device import BLEDevice
+from typing import Final, Optional
+from loguru import logger
+from anyio import create_udp_socket, create_connected_udp_socket
+
+DEVICE_NAME: Final[str] = "Polar Sense E4E71028"
+UDP_SERVER_HOST: Final[str] = "localhost"
+UDP_SERVER_PORT: Final[int] = 50_000
+BLE_HR_SERVICE_UUID: Final[str] = "180D"
+BLE_HR_MEASUREMENT_CHARACTERISTIC_UUID: Final[str] = "2A37"
+
+
+async def main():
+    async def find_device():
+        while True:
+            device = await BleakScanner.find_device_by_name(DEVICE_NAME)
+            if device:
+                return device
+            else:
+                logger.info("Device not found, retrying...")
+
+    async with await create_connected_udp_socket(
+        remote_host=UDP_SERVER_HOST, remote_port=UDP_SERVER_PORT
+    ) as udp:
+        device = await find_device()
+        async with BleakClient(device) as client:
+            logger.info("Connected to target device")
+
+            async def find_service(uuid: str):
+                services = await client.get_services()
+                for s in services:
+                    if uuid.lower() in s.uuid.lower():
+                        return s
+                for s in services:
+                    logger.info("Service: {}", s.uuid)
+                raise ValueError(f"Service not found: {uuid}")
+
+            async def find_char(service_uuid: str, char_uuid: str):
+                service = await find_service(service_uuid)
+                char = service.get_characteristic(char_uuid)
+                if char is None:
+                    raise ValueError(f"Characteristic not found: {char_uuid}")
+                return char
+
+            hr_measurement_char = await find_char(
+                BLE_HR_SERVICE_UUID, BLE_HR_MEASUREMENT_CHARACTERISTIC_UUID
+            )
+
+            async def on_hr_data(char: BleakGATTCharacteristic, data: bytearray):
+                logger.info("hr_measurement={}", data.hex())
+                await udp.send(data)
+
+            logger.info("Starting notify")
+            await client.start_notify(hr_measurement_char, on_hr_data)
+            ev = anyio.Event()
+            await ev.wait()
+
+
+if __name__ == "__main__":
+    anyio.run(main)

components/app_proto/proto/hr_packet.proto

@@ -0,0 +1,86 @@
+// See `Generator Options` section in
+// https://jpa.kapsi.fi/nanopb/docs/reference.html#generator-options
+// for nanopb specific options
+//
+// Remember to include
+// https://github.com/nanopb/nanopb/blob/master/generator/proto/nanopb.proto
+// when generating the proto file
+
+syntax = "proto3";
+import "nanopb.proto";
+
+package hr_packet;
+
+enum HrConfidence {
+    // [0,25)
+    ZERO = 0;
+    // [25,50)
+    LOW     = 1;
+    // [50,75]
+    MEDIUM  = 2;
+    // (75,100]
+    HIGH    = 3;
+}
+
+enum LoRaBW {
+    BW_NONE = 0;
+    // nobody is using 7.8 kHz bandwidth
+    // so to satisfy protobuf, we use NONE for zero value
+    BW_10_4 = 0x08;
+    BW_15_6 = 0x01;
+    BW_20_8 = 0x09;
+    BW_31_25 = 0x02;
+    BW_41_7 = 0x0A;
+    BW_62_5 = 0x03;
+    BW_125_0 = 0x04;
+    BW_250_0 = 0x05;
+    BW_500_0 = 0x06;
+}
+
+message LoRaParameters {
+    LoRaBW bw = 1;
+    int32 sf = 2  [(nanopb).int_size = IS_8];
+    float frequency = 3;
+}
+
+message StatusFlag {
+    HrConfidence hr_confidence = 1 [(nanopb).int_size = IS_8]; 
+    bool is_active             = 2;
+    bool is_on_skin            = 3;
+    uint32 battery             = 4 [(nanopb).int_size = IS_8];
+}
+
+message HrOnlyPacket {
+    StatusFlag status           = 1 [(nanopb).int_size = IS_8];
+    uint32 id                   = 2 [(nanopb).int_size = IS_8];
+    uint32 packet_num           = 3 [(nanopb).int_size = IS_8];
+    uint32 hr                   = 4 [(nanopb).int_size = IS_8];
+}
+
+message HrPpgPacket {
+    StatusFlag status           = 1 [(nanopb).int_size = IS_8];
+    uint32 id                   = 2 [(nanopb).int_size = IS_8];
+    uint32 packet_num           = 3 [(nanopb).int_size = IS_8];
+    uint32 hr                   = 4 [(nanopb).int_size = IS_8];
+    repeated uint32 ppg_data     = 5 [(nanopb).max_count = 36];
+}
+
+message PacketStatus {
+	// Estimation of RSSI of the LoRa® signal (after despreading) on last packet received.
+    sint32 signal_rssi_pkt      = 1;
+}
+
+message GatewayInfo {
+    uint32 region_id            = 1 [(nanopb).int_size = IS_8];
+    bytes gateway_mac          = 2 [(nanopb).max_size = 6];
+    LoRaParameters radio_parameters = 3;
+}
+
+message HrPacket {
+    GatewayInfo gateway_info     = 1;
+    oneof packet {
+        HrOnlyPacket hr_only_packet = 2;
+        HrPpgPacket hr_ppg_packet = 3;
+    }
+    PacketStatus packet_status    = 4;
+}

components/app_proto/proto/nanopb.proto

@@ -0,0 +1,213 @@
+// This file contains definitions of custom options used to control the
+// code generator in nanopb protocol buffers library.
+//
+// Most commonly used options are max_count and max_size, which allow
+// the generator to allocate static arrays for repeated and string fields.
+//
+// There are three ways to use these options:
+//  1. Use a separate <protofile>.options file
+//  2. Use command line switches to nanopb_generator.py
+//  3. Use [(nanopb).option = value] in your <protofile>.proto file
+//
+// For detailed documentation, refer to "Generator options" in docs/reference.md
+
+syntax = "proto2";
+import "google/protobuf/descriptor.proto";
+
+option java_package = "fi.kapsi.koti.jpa.nanopb";
+
+enum FieldType {
+    FT_DEFAULT = 0; // Automatically decide field type, generate static field if possible.
+    FT_CALLBACK = 1; // Always generate a callback field.
+    FT_POINTER = 4; // Always generate a dynamically allocated field.
+    FT_STATIC = 2; // Generate a static field or raise an exception if not possible.
+    FT_IGNORE = 3; // Ignore the field completely.
+    FT_INLINE = 5; // Legacy option, use the separate 'fixed_length' option instead
+}
+
+enum IntSize {
+    IS_DEFAULT = 0; // Default, 32/64bit based on type in .proto
+    IS_8 = 8;
+    IS_16 = 16;
+    IS_32 = 32;
+    IS_64 = 64;
+}
+
+enum TypenameMangling {
+    M_NONE = 0; // Default, no typename mangling
+    M_STRIP_PACKAGE = 1; // Strip current package name
+    M_FLATTEN = 2; // Only use last path component
+    M_PACKAGE_INITIALS = 3; // Replace the package name by the initials
+}
+
+enum DescriptorSize {
+    DS_AUTO = 0; // Select minimal size based on field type
+    DS_1 = 1;    // 1 word; up to 15 byte fields, no arrays
+    DS_2 = 2;    // 2 words; up to 4095 byte fields, 4095 entry arrays
+    DS_4 = 4;    // 4 words; up to 2^32-1 byte fields, 2^16-1 entry arrays
+    DS_8 = 8;    // 8 words; up to 2^32-1 entry arrays
+}
+
+// This is the inner options message, which basically defines options for
+// a field. When it is used in message or file scope, it applies to all
+// fields.
+message NanoPBOptions {
+  // Allocated size for 'bytes' and 'string' fields.
+  // For string fields, this should include the space for null terminator.
+  optional int32 max_size = 1;
+  
+  // Maximum length for 'string' fields. Setting this is equivalent
+  // to setting max_size to a value of length+1.
+  optional int32 max_length = 14;
+  
+  // Allocated number of entries in arrays ('repeated' fields)
+  optional int32 max_count = 2;
+  
+  // Size of integer fields. Can save some memory if you don't need
+  // full 32 bits for the value.
+  optional IntSize int_size = 7 [default = IS_DEFAULT];
+
+  // Size for enum fields. Supported by C++11 and C23 standards.
+  optional IntSize enum_intsize = 34 [default = IS_DEFAULT];
+
+  // Force type of field (callback or static allocation)
+  optional FieldType type = 3 [default = FT_DEFAULT];
+  
+  // Use long names for enums, i.e. EnumName_EnumValue.
+  optional bool long_names = 4 [default = true];
+  
+  // Add 'packed' attribute to generated structs.
+  // Note: this cannot be used on CPUs that break on unaligned
+  // accesses to variables.
+  optional bool packed_struct = 5 [default = false];
+  
+  // Add 'packed' attribute to generated enums.
+  optional bool packed_enum = 10 [default = false];
+  
+  // Skip this message
+  optional bool skip_message = 6 [default = false];
+
+  // Generate oneof fields as normal optional fields instead of union.
+  optional bool no_unions = 8 [default = false];
+
+  // integer type tag for a message
+  optional uint32 msgid = 9;
+
+  // decode oneof as anonymous union
+  optional bool anonymous_oneof = 11 [default = false];
+
+  // Proto3 singular field does not generate a "has_" flag
+  optional bool proto3 = 12 [default = false];
+  
+  // Force proto3 messages to have no "has_" flag.
+  // This was default behavior until nanopb-0.4.0.
+  optional bool proto3_singular_msgs = 21 [default = false];
+
+  // Generate an enum->string mapping function (can take up lots of space).
+  optional bool enum_to_string = 13 [default = false];
+
+  // Generate validation methods for enums
+  optional bool enum_validate = 32 [default = false];
+
+  // Generate bytes arrays with fixed length
+  optional bool fixed_length = 15 [default = false];
+
+  // Generate repeated field with fixed count
+  optional bool fixed_count = 16 [default = false];
+
+  // Generate message-level callback that is called before decoding submessages.
+  // This can be used to set callback fields for submsgs inside oneofs.
+  optional bool submsg_callback = 22 [default = false];
+
+  // Shorten or remove package names from type names.
+  // This option applies only on the file level.
+  optional TypenameMangling mangle_names = 17 [default = M_NONE];
+
+  // Data type for storage associated with callback fields.
+  optional string callback_datatype = 18 [default = "pb_callback_t"];
+
+  // Callback function used for encoding and decoding.
+  // Prior to nanopb-0.4.0, the callback was specified in per-field pb_callback_t
+  // structure. This is still supported, but does not work inside e.g. oneof or pointer
+  // fields. Instead, a new method allows specifying a per-message callback that
+  // will be called for all callback fields in a message type.
+  optional string callback_function = 19 [default = "pb_default_field_callback"];
+
+  // Select the size of field descriptors. This option has to be defined
+  // for the whole message, not per-field. Usually automatic selection is
+  // ok, but if it results in compilation errors you can increase the field
+  // size here.
+  optional DescriptorSize descriptorsize = 20 [default = DS_AUTO];
+
+  // Set default value for has_ fields.
+  optional bool default_has = 23 [default = false];
+
+  // Extra files to include in generated `.pb.h`
+  repeated string include = 24;
+
+  // Automatic includes to exclude from generated `.pb.h`
+  // Same as nanopb_generator.py command line flag -x.
+  repeated string exclude = 26;
+
+  // Package name that applies only for nanopb.
+  optional string package = 25;
+  
+  // Override type of the field in generated C code. Only to be used with related field types
+  optional google.protobuf.FieldDescriptorProto.Type type_override = 27;
+
+  // Override of the label of the field (see FieldDescriptorProto.Label). Can be used to create
+  // fields which nanopb considers required in proto3, or whether nanopb treats the field as
+  // optional/required/repeated.
+  optional google.protobuf.FieldDescriptorProto.Label label_override = 31;
+
+  // Due to historical reasons, nanopb orders fields in structs by their tag number
+  // instead of the order in .proto. Set this to false to keep the .proto order.
+  // The default value will probably change to false in nanopb-0.5.0.
+  optional bool sort_by_tag = 28 [default = true];
+
+  // Set the FT_DEFAULT field conversion strategy.
+  // A field that can become a static member of a c struct (e.g. int, bool, etc)
+  // will be a a static field.
+  // Fields with dynamic length are converted to either a pointer or a callback.
+  optional FieldType fallback_type = 29 [default = FT_CALLBACK]; 
+
+  // Override initializer used in generated MyMessage_init_zero and MyMessage_init_default macros
+  // By default decided automatically based on field default value and datatype.
+  optional string initializer = 30;
+
+  // Discard unused types that are automatically generated by protoc if they are not actually
+  // needed. Currently this applies to map< > types when the field is ignored by options.
+  optional bool discard_unused_automatic_types = 33 [default = true];
+
+  // Discard messages and fields marked with [deprecated = true] in the proto file.
+  optional bool discard_deprecated = 35 [default = false];
+}
+
+// Extensions to protoc 'Descriptor' type in order to define options
+// inside a .proto file.
+//
+// Protocol Buffers extension number registry
+// --------------------------------
+// Project:  Nanopb
+// Contact:  Petteri Aimonen <jpa@kapsi.fi>
+// Web site: http://kapsi.fi/~jpa/nanopb
+// Extensions: 1010 (all types)
+// --------------------------------
+
+extend google.protobuf.FileOptions {
+    optional NanoPBOptions nanopb_fileopt = 1010;
+}
+
+extend google.protobuf.MessageOptions {
+    optional NanoPBOptions nanopb_msgopt = 1010;
+}
+
+extend google.protobuf.EnumOptions {
+    optional NanoPBOptions nanopb_enumopt = 1010;
+}
+
+extend google.protobuf.FieldOptions {
+    optional NanoPBOptions nanopb = 1010;
+}
+
+

convert_parquet_to_csv.py

@@ -0,0 +1,120 @@
+#!/usr/bin/env python3
+"""
+Convert parquet file to CSV with only HR field
+"""
+
+import pyarrow.parquet as pq
+import pyarrow as pa
+import pandas as pd
+import sys
+
+
+def convert_parquet_to_csv(parquet_file, output_file):
+    """Convert parquet file to CSV extracting only HR data"""
+    try:
+        # Read the parquet file
+        print(f"Reading {parquet_file}...")
+        pf = pq.ParquetFile(parquet_file)
+
+        print("Schema:")
+        print(pf.schema)
+
+        # Try to read just specific columns
+        try:
+            # Read the table with specific columns
+            table = pf.read(columns=["hr_data"])
+            print("Successfully read hr_data column")
+
+            # Convert to pandas, handling the nested structure carefully
+            df = table.to_pandas()
+            print("Converted to pandas DataFrame")
+
+        except Exception as e:
+            print(f"Error reading with pandas conversion: {e}")
+            # Try alternative approach - read raw pyarrow table
+            table = pf.read()
+            print("Read raw table successfully")
+
+            # Get hr_data column directly from pyarrow
+            hr_data_column = table.column("hr_data")
+            print(f"HR data column type: {hr_data_column.type}")
+
+            # Convert the column to a list format
+            hr_data_values = []
+            for i in range(len(hr_data_column)):
+                chunk = hr_data_column.chunk(0)
+                list_array = chunk.slice(i, 1).to_pandas().iloc[0]
+                if list_array is not None and len(list_array) > 0:
+                    hr_data_values.extend(list_array)
+
+            if hr_data_values:
+                # Create DataFrame with HR data
+                hr_df = pd.DataFrame({"HR": hr_data_values})
+
+                print(f"\nExtracted {len(hr_data_values)} HR values")
+                print("Sample HR values:")
+                print(hr_df.head(10))
+
+                # Save to CSV
+                hr_df.to_csv(output_file, index=False)
+                print(f"\nSaved HR data to {output_file}")
+                return True
+            else:
+                print("No HR data found")
+                return False
+
+        # If we got here, the pandas conversion worked
+        print("Columns available:")
+        print(df.columns.tolist())
+        print("\nData shape:", df.shape)
+
+        # Extract HR data - assuming it's in hr_data column
+        if "hr_data" in df.columns:
+            # Handle nested list structure
+            hr_values = []
+            for row_idx in range(len(df)):
+                hr_data = df["hr_data"].iloc[row_idx]
+                if hr_data is not None and len(hr_data) > 0:
+                    hr_values.extend(hr_data)
+
+            if hr_values:
+                # Create a new DataFrame with HR data
+                hr_df = pd.DataFrame({"HR": hr_values})
+
+                print(f"\nExtracted {len(hr_values)} HR values")
+                print("Sample HR values:")
+                print(hr_df.head(10))
+
+                # Save to CSV
+                hr_df.to_csv(output_file, index=False)
+                print(f"\nSaved HR data to {output_file}")
+                return True
+            else:
+                print("No HR values found in the data")
+                return False
+        else:
+            print("Error: 'hr_data' column not found in the data")
+            print("Available columns:", df.columns.tolist())
+            return False
+
+    except Exception as e:
+        print(f"Error: {e}")
+        import traceback
+
+        traceback.print_exc()
+        return False
+
+
+if __name__ == "__main__":
+    parquet_file = "history_20250610_165414.parquet"
+    output_file = "history_20250610_165414_HR.csv"
+
+    success = convert_parquet_to_csv(parquet_file, output_file)
+
+    if success:
+        print(f"\nConversion completed successfully!")
+        print(f"Input: {parquet_file}")
+        print(f"Output: {output_file}")
+    else:
+        print("Conversion failed!")
+        sys.exit(1)

gen_client.sh

@@ -0,0 +1,7 @@
+#!/usr/bin/env bash
+SCRIPT_DIR=$( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
+PROJECT_ROOT=$SCRIPT_DIR
+APP_PROTO_DIR=$PROJECT_ROOT/components/app_proto/proto
+OUTPUT_DIR=$SCRIPT_DIR/app/proto
+
+uv run python -m grpc_tools.protoc --python_betterproto_out=$OUTPUT_DIR -I $APP_PROTO_DIR $APP_PROTO_DIR/hr_packet.proto

history_20250610_165414_HR.csv

@@ -0,0 +1,89 @@
+HR
+120.0
+120.0
+120.0
+121.0
+121.0
+121.0
+122.0
+124.0
+124.0
+124.0
+125.0
+125.0
+125.0
+125.0
+124.0
+124.0
+125.0
+126.0
+127.0
+129.0
+130.0
+131.0
+132.0
+134.0
+135.0
+137.0
+138.0
+140.0
+141.0
+143.0
+144.0
+144.0
+145.0
+146.0
+147.0
+147.0
+147.0
+145.0
+144.0
+143.0
+142.0
+140.0
+139.0
+138.0
+138.0
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main.py

@@ -18,26 +18,23 @@ import numpy as np
 import plotly.graph_objects as go
 import streamlit as st
 import anyio
-from anyio.abc import TaskGroup
-from anyio import create_memory_object_stream
+from anyio.abc import TaskGroup, UDPSocket
+from anyio import create_memory_object_stream, create_udp_socket
 from anyio.streams.memory import MemoryObjectSendStream, MemoryObjectReceiveStream
-from aiomqtt import Client as MqttClient, Message as MqttMessage
 from threading import Thread
 from time import sleep
 from pydantic import BaseModel, computed_field
-from datetime import datetime
+from datetime import datetime, timedelta
 import awkward as ak
 from awkward import Array as AwkwardArray, Record as AwkwardRecord
-import orjson
+from app.model import AlgoReport
+from app.utils import Instant
+from collections import deque
+from dataclasses import dataclass
+from aiomqtt import Client as MqttClient, Message as MqttMessage
 
 
-# https://handmadesoftware.medium.com/streamlit-asyncio-and-mongodb-f85f77aea825
-class AppState(TypedDict):
-    worker_thread: Thread
-    client: MqttClient
-    message_queue: MemoryObjectReceiveStream[MqttMessage]
-    task_group: TaskGroup
-    history: dict[str, AwkwardArray]
+SELECT_BAND_ID = 17
 
 
 MQTT_BROKER: Final[str] = "192.168.2.189"
@@ -49,187 +46,201 @@ NDArray = np.ndarray
 T = TypeVar("T")
 
 
+class AppHistory(TypedDict):
+    timescape: deque[datetime]
+    hr_data: deque[float]
+    hr_conf: deque[float]  # in %
+
+
+# https://handmadesoftware.medium.com/streamlit-asyncio-and-mongodb-f85f77aea825
+class AppState(TypedDict):
+    worker_thread: Thread
+    message_queue: MemoryObjectReceiveStream[bytes]
+    task_group: TaskGroup
+    history: AppHistory
+    refresh_inst: Instant
+
+
+UDP_SERVER_HOST: Final[str] = "localhost"
+UDP_SERVER_PORT: Final[int] = 50_000
+MAX_LENGTH = 600
+NDArray = np.ndarray
+
+T = TypeVar("T")
+
+
 def unwrap(value: Optional[T]) -> T:
     if value is None:
         raise ValueError("Value is None")
     return value
 
 
+# /**
+#  * @brief Structure of the Heart Rate Measurement characteristic
+#  *
+#  * @see https://www.bluetooth.com/specifications/gss/
+#  * @see section 3.116 Heart Rate Measurement of the document: GATT Specification Supplement.
+#  */
+# struct ble_hr_measurement_flag_t {
+# 	// LSB first
+
+# 	/*
+# 	 * 0: uint8_t
+# 	 * 1: uint16_t
+# 	 */
+# 	bool heart_rate_value_format : 1;
+# 	bool sensor_contact_detected : 1;
+# 	bool sensor_contact_supported : 1;
+# 	bool energy_expended_present : 1;
+# 	bool rr_interval_present : 1;
+# 	uint8_t reserved : 3;
+# };
+
+
+def parse_ble_hr_measurement(data: bytes) -> Optional[int]:
+    """
+    Parse BLE Heart Rate Measurement characteristic data according to Bluetooth specification.
+
+    Args:
+        data: Raw bytes from the heart rate measurement characteristic
+
+    Returns:
+        Heart rate value in BPM, or None if parsing fails
+    """
+    if len(data) < 2:
+        return None
+
+    # First byte contains flags
+    flags = data[0]
+
+    # Bit 0: Heart Rate Value Format (0 = uint8, 1 = uint16)
+    heart_rate_value_format = (flags & 0x01) != 0
+
+    try:
+        if heart_rate_value_format:
+            # 16-bit heart rate value (little endian)
+            if len(data) < 3:
+                return None
+            hr_value = int.from_bytes(data[1:3], byteorder="little")
+        else:
+            # 8-bit heart rate value
+            hr_value = data[1]
+
+        return hr_value
+    except (IndexError, ValueError):
+        return None
+
+
 @st.cache_resource
 def resource(params: Any = None):
-    client: Optional[MqttClient] = None
-    tx, rx = create_memory_object_stream[MqttMessage]()
+    set_ev = anyio.Event()
+    tx, rx = create_memory_object_stream[bytes]()
     tg: Optional[TaskGroup] = None
 
-    async def main():
+    async def poll_task():
+        nonlocal set_ev
         nonlocal tg
-        nonlocal client
         tg = anyio.create_task_group()
+        set_ev.set()
         async with tg:
-            client = MqttClient(MQTT_BROKER, port=MQTT_BROKER_PORT)
-            async with client:
-                await client.subscribe(TOPIC)
-                logger.info(
-                    "Subscribed {}:{} to topic {}", MQTT_BROKER, MQTT_BROKER_PORT, TOPIC
-                )
-                # https://aiomqtt.bo3hm.com/subscribing-to-a-topic.html
-                async for message in client.messages:
-                    await tx.send(message)
+            async with await create_udp_socket(
+                local_host=UDP_SERVER_HOST, local_port=UDP_SERVER_PORT, reuse_port=True
+            ) as udp:
+                async for packet, _ in udp:
+                    await tx.send(packet)
 
-    tr = Thread(target=anyio.run, args=(main,))
+    tr = Thread(target=anyio.run, args=(poll_task,))
     tr.start()
-    sleep(0.1)
+    while not set_ev.is_set():
+        sleep(0.001)
+    logger.info("Poll task initialized")
     state: AppState = {
         "worker_thread": tr,
-        "client": unwrap(client),
         "message_queue": rx,
         "task_group": unwrap(tg),
-        "history": {},
+        "history": {
+            "timescape": deque(maxlen=MAX_LENGTH),
+            "hr_data": deque(maxlen=MAX_LENGTH),
+            "hr_conf": deque(maxlen=MAX_LENGTH),
+        },
+        "refresh_inst": Instant(),
     }
+    logger.info("Resource created")
     return state
 
 
-class GwMessage(TypedDict):
-    v: int
-    mid: int
-    time: int
-    ip: str
-    mac: str
-    devices: list[Any]
-    rssi: int
-
-
-class DeviceMessage(BaseModel):
-    mac: str
-    """
-    Hex string, capital letters, e.g. "D6AF1CA9C491"
-    """
-    service: str
-    """
-    Hex string, capital letters, e.g. "180D"
-    """
-    characteristic: str
-    """
-    Hex string, capital letters, e.g. "2A37"
-    """
-    value: str
-    """
-    Hex string, capital letters, e.g. "0056"
-    """
-    rssi: int
-
-    @property
-    def value_bytes(self) -> bytes:
-        return bytes.fromhex(self.value)
-
-
-def get_device_data(message: GwMessage) -> List[DeviceMessage]:
-    """
-    devices
-
-    [[5,"D6AF1CA9C491","180D","2A37","0056",-58],[5,"A09E1AE4E710","180D","2A37","0055",-50]]
-
-    unknown, mac addr, service, characteristic, value (hex), rssi
-    """
-    l: list[DeviceMessage] = []
-    for d in message["devices"]:
-        x, mac, service, characteristic, value, rssi = d
-        l.append(
-            DeviceMessage(
-                mac=mac,
-                service=service,
-                characteristic=characteristic,
-                value=value,
-                rssi=rssi,
-            )
-        )
-    return l
-
-
-def payload_to_hr(payload: bytes) -> int:
-    """
-    ignore the first byte, parse the rest as a big-endian integer
-
-    Bit 0 (Heart Rate Format)
-        0: Heart rate value is 8 bits
-        1: Heart rate value is 16 bits
-    Bit 3 (Energy Expended)
-        Indicates whether energy expended data is present
-    Bit 4 (RR Interval)
-        Indicates whether RR interval data is present
-    """
-    flags = payload[0]
-    if flags & 0b00000001:
-        return int.from_bytes(payload[1:3], "big")
-    else:
-        return payload[1]
-
-
 def main():
     state = resource()
-    logger.info("Resource created")
     history = state["history"]
 
-    def push_new_message(message: GwMessage):
-        dms = get_device_data(message)
-        now = datetime.now()
-        for dm in dms:
-            rec = AwkwardRecord(
-                {
-                    "time": now,
-                    "value": payload_to_hr(dm.value_bytes),
-                    "rssi": dm.rssi,
-                }
-            )
-            if dm.mac not in history:
-                history[dm.mac] = AwkwardArray([rec])
-            else:
-                history[dm.mac] = ak.concatenate([history[dm.mac], [rec]])
-                if len(history[dm.mac]) > MAX_LENGTH:
-                    history[dm.mac] = AwkwardArray(history[dm.mac][-MAX_LENGTH:])
-
     def on_export():
-        now = datetime.now()
-        filename = f"export-{now.strftime('%Y-%m-%d-%H-%M-%S')}.parquet"
-        ak.to_parquet([history], filename)
-        logger.info("Export to {}", filename)
+        file_name = f"history_{datetime.now().strftime('%Y%m%d_%H%M%S')}.parquet"
+        logger.info(f"Exporting to {file_name}")
+        rec = ak.Record(history)
+        ak.to_parquet(rec, file_name)
 
     def on_clear():
-        history.clear()
-        logger.info("History cleared")
+        nonlocal history
+        logger.info("Clearing history")
+        history["timescape"].clear()
+        history["hr_data"].clear()
+        history["hr_conf"].clear()
+
+    # https://docs.streamlit.io/develop/api-reference/layout
+    st.title("MAX-BAND Visualizer")
+    with st.container(border=True):
+        c1, c2 = st.columns(2)
+        with c1:
+            st.button(
+                "Export",
+                help="Export the current data to a parquet file",
+                on_click=on_export,
+            )
+        with c2:
+            st.button(
+                "Clear",
+                help="Clear the current data",
+                on_click=on_clear,
+            )
+
+    placeholder = st.empty()
+    md_placeholder = st.empty()
 
-    st.button(
-        "Export", help="Export the current data to a parquet file", on_click=on_export
-    )
-    st.button("Clear", help="Clear the current data", on_click=on_clear)
-    pannel = st.empty()
     while True:
         try:
             message = state["message_queue"].receive_nowait()
         except anyio.WouldBlock:
             continue
-        m: str
-        if isinstance(message.payload, str):
-            m = message.payload
-        elif isinstance(message.payload, bytes):
-            m = message.payload.decode("utf-8")
-        else:
-            logger.warning("Unknown message type: {}", type(message.payload))
+        hr_value = parse_ble_hr_measurement(message)
+        if hr_value is None:
+            logger.error("Failed to parse heart rate measurement data")
             continue
-        d = cast(GwMessage, orjson.loads(m))
-        push_new_message(d)
 
-        def to_scatter(key: str, dev_history: AwkwardArray):
-            x = ak.to_numpy(dev_history["time"])
-            y = ak.to_numpy(dev_history["value"])
-            return go.Scatter(x=x, y=y, mode="lines+markers", name=key)
+        with placeholder.container():
+            history["hr_data"].append(float(hr_value))
+            history["hr_conf"].append(
+                100.0
+            )  # Default confidence since we're not parsing it
+            fig_hr, fig_pd = st.tabs(["Heart Rate", "PD"])
 
-        scatters = [to_scatter(k, el) for k, el in history.items()]
-        fig = go.Figure(scatters)
-        pannel.plotly_chart(fig)
+            with fig_hr:
+                st.plotly_chart(
+                    go.Figure(
+                        data=[
+                            go.Scatter(
+                                y=list(history["hr_data"]),
+                                mode="lines",
+                                name="HR",
+                            ),
+                            go.Scatter(
+                                y=list(history["hr_conf"]),
+                                mode="lines",
+                                name="HR Confidence",
+                            ),
+                        ]
+                    )
+                )
 
 
 if __name__ == "__main__":
     main()
-
-# 1659A202

main_mqtt.py

@@ -0,0 +1,234 @@
+from typing import (
+    Annotated,
+    AsyncGenerator,
+    Final,
+    Generator,
+    List,
+    Literal,
+    Optional,
+    Tuple,
+    TypeVar,
+    TypedDict,
+    Any,
+    cast,
+)
+
+from loguru import logger
+import numpy as np
+import plotly.graph_objects as go
+import streamlit as st
+import anyio
+from anyio.abc import TaskGroup
+from anyio import create_memory_object_stream
+from anyio.streams.memory import MemoryObjectSendStream, MemoryObjectReceiveStream
+from aiomqtt import Client as MqttClient, Message as MqttMessage
+from threading import Thread
+from time import sleep
+from pydantic import BaseModel, computed_field
+from datetime import datetime
+import awkward as ak
+from awkward import Array as AwkwardArray, Record as AwkwardRecord
+
+
+# https://handmadesoftware.medium.com/streamlit-asyncio-and-mongodb-f85f77aea825
+class AppState(TypedDict):
+    worker_thread: Thread
+    client: MqttClient
+    message_queue: MemoryObjectReceiveStream[MqttMessage]
+    task_group: TaskGroup
+    history: dict[str, AwkwardArray]
+
+
+MQTT_BROKER: Final[str] = "192.168.2.189"
+MQTT_BROKER_PORT: Final[int] = 1883
+MAX_LENGTH = 600
+TOPIC: Final[str] = "GwData"
+NDArray = np.ndarray
+
+T = TypeVar("T")
+
+
+def unwrap(value: Optional[T]) -> T:
+    if value is None:
+        raise ValueError("Value is None")
+    return value
+
+
+@st.cache_resource
+def resource(params: Any = None):
+    client: Optional[MqttClient] = None
+    tx, rx = create_memory_object_stream[MqttMessage]()
+    tg: Optional[TaskGroup] = None
+
+    async def main():
+        nonlocal tg
+        nonlocal client
+        tg = anyio.create_task_group()
+        async with tg:
+            client = MqttClient(MQTT_BROKER, port=MQTT_BROKER_PORT)
+            async with client:
+                await client.subscribe(TOPIC)
+                logger.info(
+                    "Subscribed {}:{} to topic {}", MQTT_BROKER, MQTT_BROKER_PORT, TOPIC
+                )
+                # https://aiomqtt.bo3hm.com/subscribing-to-a-topic.html
+                async for message in client.messages:
+                    await tx.send(message)
+
+    tr = Thread(target=anyio.run, args=(main,))
+    tr.start()
+    sleep(0.1)
+    state: AppState = {
+        "worker_thread": tr,
+        "client": unwrap(client),
+        "message_queue": rx,
+        "task_group": unwrap(tg),
+        "history": {},
+    }
+    return state
+
+
+class GwMessage(TypedDict):
+    v: int
+    mid: int
+    time: int
+    ip: str
+    mac: str
+    devices: list[Any]
+    rssi: int
+
+
+class DeviceMessage(BaseModel):
+    mac: str
+    """
+    Hex string, capital letters, e.g. "D6AF1CA9C491"
+    """
+    service: str
+    """
+    Hex string, capital letters, e.g. "180D"
+    """
+    characteristic: str
+    """
+    Hex string, capital letters, e.g. "2A37"
+    """
+    value: str
+    """
+    Hex string, capital letters, e.g. "0056"
+    """
+    rssi: int
+
+    @property
+    def value_bytes(self) -> bytes:
+        return bytes.fromhex(self.value)
+
+
+def get_device_data(message: GwMessage) -> List[DeviceMessage]:
+    """
+    devices
+
+    [[5,"D6AF1CA9C491","180D","2A37","0056",-58],[5,"A09E1AE4E710","180D","2A37","0055",-50]]
+
+    unknown, mac addr, service, characteristic, value (hex), rssi
+    """
+    l: list[DeviceMessage] = []
+    for d in message["devices"]:
+        x, mac, service, characteristic, value, rssi = d
+        l.append(
+            DeviceMessage(
+                mac=mac,
+                service=service,
+                characteristic=characteristic,
+                value=value,
+                rssi=rssi,
+            )
+        )
+    return l
+
+
+def payload_to_hr(payload: bytes) -> int:
+    """
+    ignore the first byte, parse the rest as a big-endian integer
+
+    Bit 0 (Heart Rate Format)
+        0: Heart rate value is 8 bits
+        1: Heart rate value is 16 bits
+    Bit 3 (Energy Expended)
+        Indicates whether energy expended data is present
+    Bit 4 (RR Interval)
+        Indicates whether RR interval data is present
+    """
+    flags = payload[0]
+    if flags & 0b00000001:
+        return int.from_bytes(payload[1:3], "big")
+    else:
+        return payload[1]
+
+
+def main():
+    state = resource()
+    logger.info("Resource created")
+    history = state["history"]
+
+    def push_new_message(message: GwMessage):
+        dms = get_device_data(message)
+        now = datetime.now()
+        for dm in dms:
+            rec = AwkwardRecord(
+                {
+                    "time": now,
+                    "value": payload_to_hr(dm.value_bytes),
+                    "rssi": dm.rssi,
+                }
+            )
+            if dm.mac not in history:
+                history[dm.mac] = AwkwardArray([rec])
+            else:
+                history[dm.mac] = ak.concatenate([history[dm.mac], [rec]])
+                if len(history[dm.mac]) > MAX_LENGTH:
+                    history[dm.mac] = AwkwardArray(history[dm.mac][-MAX_LENGTH:])
+
+    def on_export():
+        now = datetime.now()
+        filename = f"export-{now.strftime('%Y-%m-%d-%H-%M-%S')}.parquet"
+        ak.to_parquet([history], filename)
+        logger.info("Export to {}", filename)
+
+    def on_clear():
+        history.clear()
+        logger.info("History cleared")
+
+    st.button(
+        "Export", help="Export the current data to a parquet file", on_click=on_export
+    )
+    st.button("Clear", help="Clear the current data", on_click=on_clear)
+    pannel = st.empty()
+    while True:
+        try:
+            message = state["message_queue"].receive_nowait()
+        except anyio.WouldBlock:
+            continue
+        m: str
+        if isinstance(message.payload, str):
+            m = message.payload
+        elif isinstance(message.payload, bytes):
+            m = message.payload.decode("utf-8")
+        else:
+            logger.warning("Unknown message type: {}", type(message.payload))
+            continue
+        d = cast(GwMessage, orjson.loads(m))
+        push_new_message(d)
+
+        def to_scatter(key: str, dev_history: AwkwardArray):
+            x = ak.to_numpy(dev_history["time"])
+            y = ak.to_numpy(dev_history["value"])
+            return go.Scatter(x=x, y=y, mode="lines+markers", name=key)
+
+        scatters = [to_scatter(k, el) for k, el in history.items()]
+        fig = go.Figure(scatters)
+        pannel.plotly_chart(fig)
+
+
+if __name__ == "__main__":
+    main()
+
+# 1659A202

pyproject.toml

@@ -0,0 +1,24 @@
+[project]
+name = "max_visualizer"
+version = "0.1.0"
+description = "python scripts for testing embedded system"
+readme = "README.md"
+requires-python = ">=3.12"
+dependencies = [
+    "aiomqtt>=2.4.0",
+    "anyio>=4.9.0",
+    "awkward>=2.8.3",
+    "betterproto[compiler]>=2.0.0b7",
+    "bleak>=0.22.3",
+    "grpcio-tools>=1.71.0",
+    "loguru>=0.7.3",
+    "matplotlib>=3.10.3",
+    "paho-mqtt>=2.1.0",
+    "plotly>=6.1.2",
+    "pydantic>=2.11.5",
+    "seaborn>=0.13.2",
+    "streamlit>=1.45.1",
+]
+
+[project.scripts]
+main = "main:main"

requirements.txt

@@ -0,0 +1,9 @@
+aiomqtt==2.3.0
+anyio==4.6.2.post1
+awkward==2.7.4
+loguru==0.7.2
+numpy==2.2.2
+orjson==3.10.15
+plotly==5.19.0
+pydantic==2.10.6
+streamlit==1.40.1

run.sh

@@ -1 +1,4 @@
-python -m streamlit run main.py
+#!/usr/bin/env bash
+
+# python -m streamlit run main.py
+python3.12 -m streamlit run main.py

visualize_hr_data.py

@@ -0,0 +1,216 @@
+#!/usr/bin/env python3
+"""
+Visualize HR data from two CSV files with max value alignment
+"""
+
+import pandas as pd
+import matplotlib.pyplot as plt
+import numpy as np
+from datetime import datetime, timedelta
+import seaborn as sns
+
+
+def load_and_visualize_hr_data():
+    """Load and visualize HR data from both CSV files with max value alignment"""
+
+    # Load the first CSV file (with timestamps)
+    print("Loading 2025-06-10_16_26.CSV...")
+    df1 = pd.read_csv("2025-06-10_16_26.CSV")
+    print(f"Dataset 1 shape: {df1.shape}")
+    print(f"Dataset 1 columns: {df1.columns.tolist()}")
+    print(f"Dataset 1 HR range: {df1['hr'].min():.1f} - {df1['hr'].max():.1f}")
+
+    # Load the second CSV file (HR only)
+    print("\nLoading history_20250610_165414_HR.csv...")
+    df2 = pd.read_csv("history_20250610_165414_HR.csv")
+    print(f"Dataset 2 shape: {df2.shape}")
+    print(f"Dataset 2 columns: {df2.columns.tolist()}")
+    print(f"Dataset 2 HR range: {df2['HR'].min():.1f} - {df2['HR'].max():.1f}")
+
+    # Find the maximum values and their indices
+    max_hr1 = df1["hr"].max()
+    max_idx1 = df1["hr"].idxmax()
+    max_hr2 = df2["HR"].max()
+    max_idx2 = df2["HR"].idxmax()
+
+    print(f"\nDataset 1 max HR: {max_hr1:.1f} at index {max_idx1}")
+    print(f"Dataset 2 max HR: {max_hr2:.1f} at index {max_idx2}")
+
+    # Create time indices for both datasets
+    df1["time_seconds"] = df1.index  # Use index as time in seconds
+    df2["time_seconds"] = df2.index  # Use index as time in seconds
+
+    # Align datasets by shifting so max values occur at the same time
+    # We'll align both to time = 0 at their respective max points
+    df1["time_aligned"] = df1["time_seconds"] - max_idx1
+    df2["time_aligned"] = df2["time_seconds"] - max_idx2
+
+    print(f"\nAfter alignment:")
+    print(
+        f"Dataset 1 time range: {df1['time_aligned'].min():.1f} to {df1['time_aligned'].max():.1f} seconds"
+    )
+    print(
+        f"Dataset 2 time range: {df2['time_aligned'].min():.1f} to {df2['time_aligned'].max():.1f} seconds"
+    )
+
+    # Create the visualization
+    plt.style.use("seaborn-v0_8")
+    fig, axes = plt.subplots(2, 2, figsize=(15, 10))
+    fig.suptitle(
+        "Heart Rate Data Visualization (Max Values Aligned)",
+        fontsize=16,
+        fontweight="bold",
+    )
+
+    # Plot 1: Time series of both datasets (aligned)
+    axes[0, 0].plot(
+        df1["time_aligned"],
+        df1["hr"],
+        "o-",
+        alpha=0.7,
+        markersize=3,
+        label=f"Dataset 1 (max: {max_hr1:.1f})",
+        color="blue",
+    )
+    axes[0, 0].plot(
+        df2["time_aligned"],
+        df2["HR"],
+        "s-",
+        alpha=0.7,
+        markersize=3,
+        label=f"Dataset 2 (max: {max_hr2:.1f})",
+        color="red",
+    )
+
+    # Highlight the max values
+    axes[0, 0].axvline(
+        x=0, color="black", linestyle="--", alpha=0.5, label="Max values aligned"
+    )
+    axes[0, 0].scatter([0], [max_hr1], color="blue", s=100, zorder=5, marker="*")
+    axes[0, 0].scatter([0], [max_hr2], color="red", s=100, zorder=5, marker="*")
+
+    axes[0, 0].set_xlabel("Time (seconds, aligned to max)")
+    axes[0, 0].set_ylabel("Heart Rate (bpm)")
+    axes[0, 0].set_title("Heart Rate Over Time (Aligned at Max Values)")
+    axes[0, 0].legend()
+    axes[0, 0].grid(True, alpha=0.3)
+
+    # Plot 2: Distribution comparison
+    axes[0, 1].hist(
+        df1["hr"], bins=20, alpha=0.7, label="Dataset 1", color="blue", density=True
+    )
+    axes[0, 1].hist(
+        df2["HR"], bins=20, alpha=0.7, label="Dataset 2", color="red", density=True
+    )
+    axes[0, 1].axvline(
+        max_hr1, color="blue", linestyle="--", alpha=0.8, label=f"Max 1: {max_hr1:.1f}"
+    )
+    axes[0, 1].axvline(
+        max_hr2, color="red", linestyle="--", alpha=0.8, label=f"Max 2: {max_hr2:.1f}"
+    )
+    axes[0, 1].set_xlabel("Heart Rate (bpm)")
+    axes[0, 1].set_ylabel("Density")
+    axes[0, 1].set_title("Heart Rate Distribution")
+    axes[0, 1].legend()
+    axes[0, 1].grid(True, alpha=0.3)
+
+    # Plot 3: Box plot comparison
+    data_for_box = [df1["hr"], df2["HR"]]
+    labels = ["Dataset 1\n(2025-06-10_16_26)", "Dataset 2\n(history_20250610_165414)"]
+    bp = axes[1, 0].boxplot(data_for_box, tick_labels=labels, patch_artist=True)
+    bp["boxes"][0].set_facecolor("lightblue")
+    bp["boxes"][1].set_facecolor("lightcoral")
+    axes[1, 0].set_ylabel("Heart Rate (bpm)")
+    axes[1, 0].set_title("Heart Rate Distribution Comparison")
+    axes[1, 0].grid(True, alpha=0.3)
+
+    # Plot 4: Overlay plot around max values (zoomed in view)
+    # Show ±20 seconds around the aligned max values
+    window = 20
+    df1_window = df1[(df1["time_aligned"] >= -window) & (df1["time_aligned"] <= window)]
+    df2_window = df2[(df2["time_aligned"] >= -window) & (df2["time_aligned"] <= window)]
+
+    if len(df1_window) > 0:
+        axes[1, 1].plot(
+            df1_window["time_aligned"],
+            df1_window["hr"],
+            "o-",
+            alpha=0.8,
+            markersize=4,
+            label=f"Dataset 1",
+            color="blue",
+            linewidth=2,
+        )
+    if len(df2_window) > 0:
+        axes[1, 1].plot(
+            df2_window["time_aligned"],
+            df2_window["HR"],
+            "s-",
+            alpha=0.8,
+            markersize=4,
+            label=f"Dataset 2",
+            color="red",
+            linewidth=2,
+        )
+
+    axes[1, 1].axvline(
+        x=0, color="black", linestyle="--", alpha=0.5, label="Max alignment"
+    )
+    axes[1, 1].scatter(
+        [0], [max_hr1], color="blue", s=150, zorder=5, marker="*", edgecolor="black"
+    )
+    axes[1, 1].scatter(
+        [0], [max_hr2], color="red", s=150, zorder=5, marker="*", edgecolor="black"
+    )
+
+    axes[1, 1].set_xlabel("Time (seconds, aligned to max)")
+    axes[1, 1].set_ylabel("Heart Rate (bpm)")
+    axes[1, 1].set_title(f"Zoomed View Around Max Values (±{window}s)")
+    axes[1, 1].legend()
+    axes[1, 1].grid(True, alpha=0.3)
+
+    plt.tight_layout()
+
+    # Save the plot
+    output_file = "hr_data_visualization_aligned.png"
+    plt.savefig(output_file, dpi=300, bbox_inches="tight")
+    print(f"\nVisualization saved as: {output_file}")
+
+    # Show the plot
+    plt.show()
+
+    # Print detailed statistics
+    print("\n" + "=" * 60)
+    print("DETAILED STATISTICS (MAX VALUES ALIGNED)")
+    print("=" * 60)
+    print("\nDataset 1 (2025-06-10_16_26.CSV):")
+    print(f"  Records: {len(df1)}")
+    print(f"  Mean HR: {df1['hr'].mean():.1f} bpm")
+    print(f"  Median HR: {df1['hr'].median():.1f} bpm")
+    print(f"  Max HR: {max_hr1:.1f} bpm (at original index {max_idx1})")
+    print(f"  Std Dev: {df1['hr'].std():.1f} bpm")
+    print(f"  Range: {df1['hr'].min():.1f} - {df1['hr'].max():.1f} bpm")
+
+    print("\nDataset 2 (history_20250610_165414_HR.csv):")
+    print(f"  Records: {len(df2)}")
+    print(f"  Mean HR: {df2['HR'].mean():.1f} bpm")
+    print(f"  Median HR: {df2['HR'].median():.1f} bpm")
+    print(f"  Max HR: {max_hr2:.1f} bpm (at original index {max_idx2})")
+    print(f"  Std Dev: {df2['HR'].std():.1f} bpm")
+    print(f"  Range: {df2['HR'].min():.1f} - {df2['HR'].max():.1f} bpm")
+
+    print(f"\nAlignment Info:")
+    print(f"  Max HR difference: {abs(max_hr1 - max_hr2):.1f} bpm")
+    print(
+        f"  Time shift applied: Dataset 1 shifted by -{max_idx1}s, Dataset 2 shifted by -{max_idx2}s"
+    )
+
+    print("\n" + "=" * 60)
+
+    return df1, df2
+
+
+if __name__ == "__main__":
+    print("Starting HR data visualization with max value alignment...")
+    df1, df2 = load_and_visualize_hr_data()
+    print("Visualization complete!")