chore: add open3d and h5py dependencies
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## [2026-02-09] Dependency Update
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- Encountered a TOML parse error during the first `edit` attempt due to incorrect escaping of quotes and newlines in the `newString`. Fixed by providing the literal string in a subsequent `edit` call.
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## [2026-02-09] Dependency Update
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- Added `open3d` and `h5py` to `pyproject.toml`.
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- Successfully synced with `uv sync`.
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- Verified imports:
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- open3d: 0.19.0
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- h5py: 3.15.1
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